Publications
Selected publications
2020
Chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes; José A. Campoy, Hequan Sun, Manish Goel,Wen-Biao Jiao, Kat Folz-Donahue, Christian Kukat, Manuel Rubio, David Ruiz, Bruno Huettel, Korbinian Schneeberger; doi: https://doi.org/10.1101/2020.04.24.060046
Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics; Jiao WB, Schneeberger K.; Nat Commun. 2020 Feb 20;11(1):989.doi: 10.1038/s41467-020-14779-y
2019
SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies; Goel M, Sun H, Jiao WB, Schneeberger K.; Genome Biol. 2019 Dec 16;20(1):277. doi: 10.1186/s13059-019-1911-0.
Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination; Sun H, Rowan BA, Flood PJ, Brandt R, Fuss J, Hancock AM, Michelmore RW, Huettel B, Schneeberger K.; Nat Commun. 2019 Sep 20;10(1):4310. doi: 10.1038/s41467-019-12209-2.
Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation; Kiefer C, Willing EM, Jiao WB, Sun H, Piednoël M, Hümann U, Hartwig B, Koch MA, Schneeberger K.; Nat Plants. 2019 Aug;5(8):846-855. doi: 10.1038/s41477-019-0486-9. Epub 2019 Jul 29.
2018
findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies; Sun H, Ding J, Piednoël M, Schneeberger K.; Bioinformatics. 2018 Feb 15;34(4):550-557. doi: 10.1093/bioinformatics/btx637.
2017
The impact of third generation genomic technologies on plant genome assembly; Jiao WB, Schneeberger K.; Curr Opin Plant Biol. 2017 Apr;36:64-70. doi: 10.1016/j.pbi.2017.02.002. Epub 2017 Feb 21. Review.
Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data; Jiao WB, Accinelli GG, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoel M, Woetzel S, Madrid-Herrero E, Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, Clavijo B, Coupland G, Schneeberger K.; Genome Res. 2017 May;27(5):778-786. doi: 10.1101/gr.213652.116. Epub 2017 Feb 3.